Articles in professional peer-reviewed journals
1. Experience and Present Status of Telepathology In the National Cancer Center Hospitals
Shimosato Y, Yagi Y, Yamagishi K, Mukai K, Hirohashi S, Matsumoto T, Kodama T. Experience and Present Status of Telepathology In the National Cancer Center Hospitals, Tokyo. Zentralbl. Pathology. 1992;138:413-417.
2. HDTV Image Telepathology Support Systems
Yagi Y. HDTV Image Telepathology Support Systems. Japanese Photography Society J. 1993; 56(3):234-237. (Japanese).
3. Telepathology for the Masses: Formation of the “International Consortium of Internet Telepathology”
Azumi N, Yagi Y, Elsayed A, Mun S. Telepathology for the Masses: Formation of the “International Consortium of Internet Telepathology”. Cell Vision. 1996; l3(6):447- 452
4. Implementation of Telepathology for Education
Mukai K, Yagi Y. Implementation of Telepathology for Education. J of Clinical and Experimental Medicine.2001;195(4):222-225 (Japanese).
5. Development and Experience with an Integrated System for Transplantation Telepathology
Minervini MI, Yagi Y, Marino IR, Lawson A, Nalesnik M, Randhawa P, Wu T, Fung JJ, Demetris A. Development and Experience with an Integrated System for Transplantation Telepathology. Human Pathology. 2001;32(12):1334-1343.
6. Web-casting Pathology Department Conferences in a Geographically Distributed Medical Center
Yagi Y, Ahmed I, Gross W, Becich MJ, Demetris AJ, Wells A, Wiley CA, Michalopoulos GK, Yousem SA, Barnes B, Gilbertson JR. Web-casting pathology department conferences in a geographically distributed medical center. Hum Pathol. 2004;35(7):790-7 PMID:15257541
7. Virtual Slide
Yagi Y. Virtual Slide. Optoelectronic Industry and Technology Development Association Report. 2004;16:487-492 (Japanese).
8. Digital Imaging in Pathology: the Case for Standardization
Yagi Y, Gilbertson JR. Digital imaging in pathology: the case for standardization. [original article]. J Telemed and Telecare. 2005;11(3):109-16 PMID: 15901437.
9. Digital Staining of Unstained Pathological Tissue Samples through Spectral Transmittance Classification
Bautista P, Abe T, Yamaguchi M, Yagi Y, Ohyama N. Digital Staining of Unstained Pathological Tissue Samples through Spectral Transmittance Classification. Optical Review. 2005;12(1);1-8.
10. Color Correction of Pathological Images Based on Dye Amount Quantification
Abe T, Murakami Y, Yamaguchi M, Ohyama N, Yagi Y. Color Correction of Pathological Images Based on Dye Amount Quantification. Optical Review. 2005;12(4);293-300 .
11. Digital Staining of Multispectral Images of Pathological Tissue Specimens Based on Combined Classification of Spectral Transmittance.
Bautista P, Abe T, Yamaguchi M, Yagi Y, Ohyama N. Digital Staining of Multispectral Images of Pathological Tissue Specimens Based on Combined Classification of Spectral Transmittance. Computerized Medical Imaging and Graphics. 2005; Dec 29 (8):649-657 PMID:16269238.
12. Use of Whole Slide Imaging in Surgical Pathology Quality Assurance: Design and Pilot Validation Studies
Ho J, Parwani AV, Jukic DM, Yagi Y, Anthony L, Gilbertson JR. Use of whole slide imaging in surgical pathology quality assurance: design and pilot validation studies. Human Pathology. 2006; March 37(3):322-331 PMID:16613327.
13. Primary Histologic Diagnosis Using Automated Whole Slide Imaging: A Validation Study
Gilbertson JR, Ho J, Anthony L, Jukic DM, Yagi Y, Parwani AV. Primary histologic diagnosis using automated whole slide imaging: a validation study, BMC Pathology 2006, April 27;,6:4 PMID:16643664.
14. Telepathology for Intraoperative Neuropathological Consultations at an Academic Medical Center: A Five-Year Report
Horbinski C, Fine JL, Medina-Flores R, Yagi Y, Wiley. Telepathology for Intraoperative Neuropathological Consultations at an Academic Medical Center: A Five-Year Report. Journal of Neuropathology & Experimental Neurology. 2007; August:66(8):750-759 PMID: 17882019.
15. Efficient Implementation of Dye Amount Adjustment in Pathological Images Using Multispectral Pathological Imaging, Medical Imaging Technology
Tashiro M, Murakami Y, Yamaguchi M, Obi T, Ohyama N, Abe T, Yagi Y. Efficient Implementation of Dye Amount Adjustment in Pathological Images Using Multispectral Pathological Imaging, Medical Imaging Technology 2008;26(4):240-245.
16. Comparison between a traditional single still image and a multiframe video image along the z-axis of the same microscopic field of interest in cytology: Which does contribute to telecytology?
Yamashiro K, Taira K, Matsubayashi S, Azuma M, Okuyama D, Nakajima M, Takeda H, Suzuki H, Kawamura N, Wakao F, Yagi, Y. Comparison between a traditional single still image and a multiframe video image along the z-axis of the same microscopic field of interest in cytology: Which does contribute to telecytology? Diagn Cytopathol 2009 Oct;37 (10):727-31 PMID:19373920.
17. Overview of Telepathology, Virtual Microscopy, and Whole Slide Imaging: Prospects for the Future
Weinstein RS, Graham AR, Richter LC, Barker GP, Krupinski EA, Lopez AM, Erps KA, Bhattacharyya AK, Yagi Y, Gilbertson JR. Overview of Telepathology, virtual microscopy, and whole slide imaging: prospects for the future. Hum Pathol. 2009 Aug; 40(8):1057-69.PMID:19552937 .
18. Network for Whole Slide Imaging (WSI) Clinical Usage
Yagi Y, Network for whole slide imaging (WSI) clinical usage, Diagnostic Pathology 2010,
5(Suppl 1):S21 doi:10.1186/1746-1596-5-S1-S21, April 2010.
19. Digital Pathology from the Past to the Future, Journal of eHealth
Yagi Y, Gilbertson J R, Digital Pathology from the Past to the Future, Journal of eHealth
Technology and Application, Volume 8, Number 2, September 2010:73-80.
20. Differentiating Stained Tissue Structure having Subtle Colorimetric Difference by Multispectral Image Enhancement
Bautista P A, Abe T, Yamaguchi M, Ohyama N, Gilbertson J R, Yagi Y, Differentiating Stained Tissue Structure having Subtle Colorimetric Difference by Multispectral Image Enhancement, Journal of eHealth Technology and Application, Volume 8, Number 2, September 2010:81-87.
21. Improving the visualization and detection of tissue folds in whole slide images through color enhancement
Bautista P A, Yagi Y, Improving the visualization and detection of tissue folds in whole slide images through color enhancement, J Pathol Inform 2010, 1:25 (27 November 2010), DOI: 10.4103/2153-3539.73320, PMID: 21221170.
22. 3D Imaging with WSI (Virtual Slide)
Yagi Y, 3D Imaging with WSI (Virtual Slide), Journal of eHealth Technology and Application,
Volume 8, Number 2, September 2010:94-95.
23. Network/Data Structure for WSI Clinical Usage
Yagi Y., Network/data structure for WSI clinical usage, Journal of eHealth Technology and
Application, Volume 8, Number 2, September 2010:109-111.
24. Improving the Visualization and Detection of Tissue Folds in Whole Slide Images through Color Enhancement
Bautista PA, Yagi Y. Improving the visualization and detection of tissue folds in whole slide images through color enhancement. J Pathol Inform. 2010 Nov 29; 1:25.
25. Computer aided diagnostic tools aim to empower rather than replace pathologists: Lessons learned from computational chess
Hipp J, Flotte T, Monaco J, Cheng J, Madabhushi A, Yagi Y, Rodriguez-Canales J, Emmert-Buck M, Dugan MC, Hewitt S, Toner M, Tompkins RG, Lucas D, Gilbertson JR, Balis UJ. Computer aided diagnostic tools aim to empower rather than replace pathologists: Lessons learned from computational chess. J Pathol Inform. 2011;2:25.
26. Automated area calculation of histopathologic features using SIVQ
Hipp J, Cheng J, Daignault S, Sica J, Dugan MC, Lucas D, Yagi Y, Hewitt S, Balis UJ. Automated area calculation of histopathologic features using SIVQ. Anal Cell Pathol (Amst). 2011 Jan 1; 34 (5):265-75.
27. Imaging the subcellular structure of human coronary atherosclerosis using micro-optical coherence tomography
Liu L, Gardecki JA, Nadkarni SK, Toussaint JD, Yagi Y, Bouma BE, Tearney GJ. Imaging the subcellular structure of human coronary atherosclerosis using micro-optical coherence tomography. Nature Med. 2011 Jul 10; 17(8):1010-4.
28. Distinct histopathology of acute onset or abrupt exacerbation of hypersensitivity pneumonitis
Hariri LP, Mino-Kenudson M, Shea B, Digumarthy S, Onozato M, Yagi Y, Fraire AE, Matsubara O, Mark EJ. Distinct histopathology of acute onset or abrupt exacerbation of hypersensitivity pneumonitis. Hum Pathol. 2012 May;43(5):660-8.
29. Evaluation of a completely automated tissue-sectioning machine for paraffin blocks
Onozato ML, Hammond S, Merren M, Yagi Y. Evaluation of a completely automated tissue-sectioning machine for paraffin blocks. J Clin Pathol. 2013 Feb;66(2):151-4.
30. Reflectance confocal microscopy for the diagnosis of eosinophilic esophagitis: a pilot study conducted on biopsy specimens
Yoo H, Kang D, Katz AJ, Lauwers GY, Nishioka NS, Yagi Y, Tanpowpong P, Namati J, Bouma BE, Tearney GJ. Reflectance confocal microscopy for the diagnosis of eosinophilic esophagitis: a pilot study conducted on biopsy specimens. Gastrointest Endosc. 2011 Nov; 74 (5):992-1000.
31. Evaluation and optimization for liquid-based preparation cytology in whole slide imaging.
Lee RE, McClintock DS, Laver NM, Yagi Y. Evaluation and optimization for liquid-based preparation cytology in whole slide imaging. J Pathol Inform. 2011; 2:46. Doi:10.4103/2153-3539.86285.Epub 2011 Oct 19.
32. Color standardization and optimization in whole slide imaging
Yagi, Y Color standardization and optimization in whole slide imaging. Diagnostic Pathol. 2011, 6 Suppl 1:S15.
33. Reference less image quality evaluation for whole slide imaging
Hashimoto N, Bautista, PA, Yamaguchi M, Ohyama N, Yagi Y. Reference less image quality evaluation for whole slide imaging, Journal of Pathology Informatics, 2012, 3(1): 9 PMID:22530177.
34. “Quality evaluation of microscopy and scanned histological images for diagnostic purposes”: Are scanners better than microscopes?
Yagi Y, Pantanowitz L. Comment on “Quality evaluation of microscopy and scanned histological images for diagnostic purposes”: Are scanners better than microscopes? J Pathol Inform. 2012;3:14. Epub 2012 Apr 18. PMID: 22616026.
35. Digital imaging in pathology - current applications and challenges
Brachtel E, Yagi Y. Digital imaging in pathology - current applications and challenges. J Biophotonics. 2012 Apr;5(4):327-35 PMID 22213680.
36. Potential Applications of Digital Pathology and Image Analysis for Forensic Pathology
Levy BP, Hipp JD, Balis UJ, Yagi Y, Potential Applications of Digital Pathology and Image Analysis for Forensic Pathology, Academic Forensic Pathology: 2012 2 (1) 74-79.
37. Whole slide imaging for educational purposes
Pantanowitz L, Szymas J, Yagi Y, Wilbur D. Whole slide imaging for educational purposes. J Pathol Inform 2012;3:46 PMID 23372987.
38. Tumor islands in resected early-stage lung adenocarcinomas are associated with unique clinicopathologic and molecular characteristics and worse prognosis
Onozato ML, Kovach AE, Yeap BY, Morales-Oyarvide V, Klepeis VE, Tammireddy S, Heist RS, Mark EJ, Dias-Santagata D, Iafrate AJ, Yagi Y, Mino-Kenudson M. Tumor islands in resected early-stage lung adenocarcinomas are associated with unique clinicopathologic and molecular characteristics and worse prognosis.
Am J Surg Pathol. 2013 Feb;37(2):287-94. doi: 10.1097/PAS.0b013e31826885fb. PMID: 23095504.
39. Micro-computed tomography (Micro-CT): a novel approach for intraoperative breast cancer specimen imaging
Tang R, Buckley JM, Fernandez L, Coopey S, Aftreth O, Michaelson J, Saksena M, Lei L, Specht M, Gadd M, Yagi Y, Rafferty E, Brachtel E, Smith BL. Micro-computed tomography (Micro-CT): a novel approach for intraoperative breast cancer specimen imaging. Breast Cancer Res Treat (2013) Jun;139(2);311-6doi: 10.1007/s 10549-013-2554-6. Epub2013 May 14 PMID23670129.
40. Color Standardization in whole slide imaging using a color calibration slide
Bautista PA, Hashimoto N, Yagi Y. Color Standardization in whole slide imaging using a color calibration slide. J Pathol Inform, 2014 Jan 31;5:4. doi: 10.4103/2153-3539.126153. eCollection 2014. PMID:24672739.
41. Consistency and standardization of color in medical imaging: a consensus report
Badano A, Revie,C, Casertano A, Cheng W-C, Green P, Kimpe T, Krupinski E, Sission C, Skrovseth SO, Trenor D, Boynton P, Clunie D, Flynn MJ, Heki T, Hewitt S, Homma H, Masia A, Matsui T, Nagy B, Nishibori M, Penczek J, Schopf T, Yagi Y, Yokoi H. Consistency and standardization of color in medical imaging: a consensus report. J Digit Imaging 2015 Feb;28 (1) 41-52 PMID:25005868.
42. Importance of carcinoma-associated fibroblast-derived proteins in clinical oncology
Valcz, G, Sipos, F, Tulassay, Molnar, B, Yagi, Y., Importance of carcinoma-associated fibroblast-derived proteins in clinical oncology. J Clin Pathol 2014 67 1026-1031 PMID25135950.
43. Staining correction in digital pathology by utilizing a dye amount table
Bautista, PA, Yagi Y. Staining correction in digital pathology by utilizing a dye amount table. J Digit Imaging Jan 6:2015 DOI 10.1007/s10278-014-9766-0 PMID25561073.
44. Dimensional digital reconstruction of the murine coronary system for the evaluation of chronic allograft vasculopathy
Fonyad, L, Shinoda K, Farkash, EA, Groher, M. Sebastian, DP, Szasz, AM, Colvin, RB, Yagi Y, 3-Dimensional digital reconstruction of the murine coronary system for the evaluation of chronic allograft vasculopathy, Diagnostic Pathology, 2015,Mar 28;10(1):16 DOI 10.1186/s13000-015-0248-6 PMID:25884689.
45. Evaluation of a smartphone for telepathology: Lessons learned
Fontelo P, Liu F, Yagi Y. Evaluation of a smartphone for telepathology: Lessons learned. J Pathol Inform 2015;6:35 PMID:26167379.
46. Prediction of primary breast cancer size and T-stage using micro-computed tomography in lumpectomy specimens
Sarraj WM, Tang R, Najjar AL, Griffin M, Bui AH, Zambeli-Ljepovic A, Senter‑Zapata M, Lewin‑Berlin M, Fernandez L, Buckley J, Ly A, Brachtel E, Aftreth O, Gilbertson J, Yagi Y, Gadd M, Hughes KS, Smith BL, Michaelson J. Prediction of primary breast cancer size and T-stage using micro-computed tomography in lumpectomy specimens. J Pathol Inform 2015;6:60.
47. Development of a database system and image viewer to assist in the correlation of histopathologic features and digital image analysis with clinical and molecular genetic information.
Yagi Y, Riedlinger G, Xu X, Nakamura A, Levy B, Iafrate AJ, Mino-Kenudson M, Klepeis VE, Development of a database system and image viewer to assist in the correlation of histopathologic features and digital image analysis with clinical and molecular genetic information. Patholology International 2016 Feb;66(2):63-74. doi: 10.1111/pin.12382. Epub 2016 Jan 18.
48. The Role of Micro-CT in 3D Histology Imaging
Senter-Zapata, M, Bautista, P, Griffin, M., Michaelson, J., Yagi, Y., The Role of Micro-CT in 3D Histology Imaging, Pathobiology. 2016;83(2-3):140-7. doi: 10.1159/000442387.
Epub 2016 Apr 26.
49. Development of 2D image reconstruction and viewing system for histological images from multiple tissue blocks: Towards high resolution whole organ 3D histological images
Hashimoto N, Bautista, PA, Haneishi H, Snuderl M, Yagi Y., Development of 2D image
reconstruction and viewing system for histological images from multiple tissue blocks: Towards high resolution whole organ 3D histological images, Pathobiology. 2016;83(2-3):140-7 doi: 10.1159/000442387. Epub 2016 Apr 26.
50. EGFR Mutations and ALK rearrangements are associated with low response rates to PD-1 pathway blockade in Non-Small Cell Lung Cancer (NSCLC): A retrospective analysis
Gainor JF, Shaw AT, Sequist LV, Fu X, Azzoli CG, Piotrowska Z, Huynh TGm Zhao L, Fulton L, Schultz K, Howe E, Farago AF, Sullivan RJ, Digumarthy S, Moran T, Hata AN, Yagi Y, Yeap BY, Engelman JA, Mino-Kenudson M., EGFR Mutations and ALK rearrangements are associated with low response rates to PD-1 pathway blockade in Non-Small Cell Lung Cancer (NSCLC): A retrospective analysis, Clin Cancer Res. 2016; Pil; clincanres. 3101.2015 [Epub ahead of print].
51. Three-Dimensional (3D) Imaging & Scanning: Current and Future Applications for Pathology
Navid Farahani, Alex Braun, Dylan Jutt, Todd Huffman, Nick Reder, Zheng Liu, Yukako Yagi, Liron Pantanowitz; Three-Dimensional (3D) Imaging & Scanning: Current and Future Applications for Pathology, J Pathol Inform (Serial Online)2017 (cited 2018 Nov 27);8:36 Available from: http://www.jpathinformatics.org/text.asp?2017/8/1/36/214167
52. Deformable image registration between pathological images and MR image via an optical macro image
Takashi Ohnishi, Yuka Nakamura, Toru Tanaka, Takuya Tanaka, Noriaki Hashimoto, Hideaki Haneishi, Tracy T. Batchelor, Elizabeth R. Gerstner, Jennie W. Taylor, Matija Snuderl, Yukako Yagi; Deformable image registration between pathological images and MR image via an optical macro image, 2016 July
53. Evaluation of a Confocal WSI Scanner for FISH Slide Imaging and Image Analysis
Xiujun Fu, Jochen K. Lennerz, Maristela Onozato, Anthony Iafrate, Yukako Yagi; Evaluation of a Confocal WSI Scanner for FISH Slide Imaging and Image Analysis; Diagnostic Pathology: Vol 3 No1(2017):2017
54. Towards Machine Learned Quality Control: A Benchmark for Sharpness Quantification in Digital Pathology
Campanella G, Rajanna AR, Corsale L, Schüffler PJ, Yagi Y, Fuchs TJ. Comput Med Imaging Graph. 2018 Apr; 65:142-151. doi: 10.1016/j.compmedimag.2017.09.001. Epub 2017 Sep 25 PMID: 29241972; Towards Machine Learned Quality Control: A Benchmark for Sharpness Quantification in Digital Pathology
55. Evaluation of an Automated Tissue Sectioning Machine for Digital Pathology
Fu X, Klepeis V, Yagi Y; Evaluation of an Automated Tissue Sectioning Machine for Digital Pathology, Diagnostic Pathology: Vol 4 No 1 (2018):2018
56. Whole Slide Imaging Equivalency and Efficiency Study: Experience at a Large Academic Center
Hanna MG, Reuter VE, Hameed MR, Tan LK, Chiang S, Sigel C, Hollmann T. Giri D, Samboy J. Moradel C, Rosado A, Otilano JR III, England E, Corsale L, Stamelos E, Yagi Y, et al. Whole Slide Imaging Equivalency and Efficiency Study: Experience at a Large Academic Center. Mod Pathol. 2018 in press
57. The importance of eSlide macro images for primary diagnosis with whole slide imaging
Fraggetta F, Yagi Y, Garcia‑Rojo M, Evans AJ, Tuthill JM, Baidoshvili A, et al. The importance of eSlide macro images for primary diagnosis with whole slide imaging. J Pathol Inform 2018 in Press.
58. Development of Standard Operating Procedure (SOP) of Micro-computed tomography (micro-CT) in Pathology
Teplov A, Tabata K, Fu X, Uraoka N, Roehrl MHA, Ntiamoah P, John L. Humm JL, Sirintrapun SJ, Murray MP, Shia J, Travis WD, Brogi E, Hameed M, Yagi Y. Development of Standard Operating Procedure (SOP) of Micro-computed tomography (micro-CT) in Pathology. Diagnostic Pathology 2019, 5:273. ISSN 2364-48934 DOI: http://dx.doi.org/10.17629/www.diagnosticpathology.eu-2019-5:273
59. Validation of mitotic cell quantification via microscopy and multiple whole-slide scanners
Tabata K, Uraoka N, Benhamida J, Hanna MG, Sirintrapun SJ, Gallas BD, Gong Q, Aly RG, Emoto K, Matsuda KM, Hameed MR, Klimstra DS, Yagi Y. Validation of mitotic cell quantification via microscopy and multiple whole-slide scanners. Diagn Pathol. 2019 Jun 26;14(1):65. doi: 10.1186/s13000-019-0839-8
60. Implementation of Digital Pathology Offers Clinical and Operational Increase in Efficiency and Cost Savings
Hanna MG, Reuter VE, Samboy J, England C, Corsale L, Fine SW, Agaram NP, Stamelos E, Yagi Y, Hameed M, Klimstra DS, Sirintrapun SJ; Implementation of Digital Pathology Offers Clinical and Operational Increase in Efficiency and Cost Savings. Arch Pathol Lab Med. 2019 Jun 7. doi: 10.5858/arpa.2018-0514-OA. [Epub ahead of print]
61. Automatic quantification of HER2 gene amplification in invasive breast cancer from chromogenic in situ hybridization whole slide images
Hossain, Md. Shakhawat, Hanna, Matthew G., Uraoka, Naohiro, Nakamura, Tomoya, Edelweiss, Marcia, Brogi, Edi, Hameed, Meera R., Yamaguchi, Masahiro, Ross, Dara S., Yagi, Yukako, “Automatic quantification of HER2 gene amplification in invasive breast cancer from chromogenic in situ hybridization whole slide images,” J. Med. Imag. 6(4), 047501 (2019), doi: 10.1117/1.JMI.6.4.047501.
62. Three-Dimentional Histologic, Immunohistochemical, and Multiplex Immunofluorescence Analyses of Dynamic Vessel Co-Option of Spread Through Air Spaces in Lung Adenocarcinoma
Yagi, Y., Aly, Rania G., Tabata, K., Barlas, A., Rekhtman, N., Eguchi, T., Montelcavo, J., Hameed, M., Manova-Todorova, K., Adsumilli, P., Travis, W.D. “Three-Dimentional Histologic, Immunohistochemical, and Multiplex Immunofluorescence Analyses of Dynamic Vessel Co-Option of Spread Through Air Spaces in Lung Adenocarcinoma”.
63. Banff Digital Pathology Working Group: Going Digital in Transplant Pathology
Farris, Alton B.; Moghe, Ishita; Wu, Simon; Hogan, Julien; Cornell, Lynn D.; Alexander, Mariam P.; Kers, Jesper; Demetris, Anthony J.; Levenson, Richard M; Tomaszewski, John; Barisoni, Laura; Yagi, Yukako; Solez, Kim; “Banff Digital Pathology Working Group: Going Digital in Transplant Pathology”, March 17, 2020, doi.org/10.1111/ajt.15850
64. Basic Physiological Research on the Fluttering of Sweet Potato Hornworm Using Multimedia
Nakajima, Isao; Yagi, Yukako; “Basic Physiological Research on the Fluttering of Sweet Potato Hornworm Using Multimedia.” Journal of Multimedia Information System VOL. 5, NO. 4, December 2018 (pp. 221-228): ISSN 2383-7632(Online) http://doi.org/10.33851/JMIS.2019.6.1.000
65. Detection and assessment of capsular invasion, vascular invasion and lymph node metastasis volume in thyroid carcinoma using microCT scanning of paraffin tissue blocks (3D whole block imaging): a proof of concept
Xu, Bin; Teplov, Alexei; Ibrahim, Kareem; Inoue, Takashi; Stueben, Ben; Katabi, Nora; Hameed, Meera; Yagi, Yukako; Ghossein, Ronald; “Detection and assessment of capsular invasion, vascular invasion and lymph node metastasis volume in thyroid carcinoma using microCT scanning of paraffin tissue blocks (3D whole block imaging): a proof of concept.” Mod Pathol, July 02, 2020; https://doi.org/10.1038/s41379-020-0605-1
66. Automatic quality evaluation of whole slide images for the practical use of whole slide imaging scanner
Shakhawat, MD Hossain; Nakamura, Tomoya; Kimura, Fumikazu; Yagi, Yukako; Yamaguchi, Masahiro; “Automatic quality evaluation of whole slide images for the practical use of whole slide imaging scanner.”
Non-peer reviewed scientific or medical publications/materials in print or other media
1. Experience in Telecytodiagnosis
Yamagishi K., Matsumoto T., Yagi Y., Kodama T., Shimosato Y. Experience in Telecytodiagnosis. Proceedings of The 6th Meeting of the Japanese-German Cooperative Congress of Clinical Cytology 1993:141-146.
2. Cytological Diagnosis Through Video Image; An Attempt of Quality Assurance Program
Yamagishi K., Matsumoto T., Yagi Y., Kodama T., Shimosato Y. Cytological Diagnosis Through Video Image; An Attempt of Quality Assurance Program. Proceedings of The 7th Meeting of the Japanese-German Cooperative Congress of Clinical Cytology 1994:24-25.
3. In Current Encyclopedia of Pathology
Shimosato Y, Yagi Y, Yamagishi K, Matsumoto T, Kodama T, Mukai K, Shimoda T. [chapter] In Current Encyclopedia of Pathology. Nakayama-Shoten. 1995; 1:267-276.
4. Evaluation of Image Quality and Factor for International Telepathology through The Internet
Yagi Y, Azumi N, Elsayed AM, Mun S. Evaluation of Image Quality and Factor for International Telepathology through The Internet. Proceedings of SPIE, Medical Imaging, Image Display 1997:810 – 819.
5. Surface Reconstruction and Visualization of Surgical Prostate Model
Xuan J, Sesterhenn A, Hayes W, Wang Y, Adali T, Yagi Y, Freedman M, Mun S. Surface Reconstruction and Visualization of Surgical Prostate Model. Proceedings of SPIE, Medical Imaging, Image Display 1997:50–51.
6. Telepathology Clinical Guideline by American
Yagi Y (ATA Pathology SIG).[editorial] Telepathology Clinical Guideline by American:1997.
7. Evaluation of prostate tumor grades by content based image retrieval
Wetzel AW, Crowley, R, Kim SJ, Dawson R, Zheng L, Joo YM, Yagi Y, Gilbertson JR, Gadd C, Deerfield DW, Becich MJ. Evaluation of prostate tumor grades by content based image retrieval. In: Mericsko RJ editor. Proceedings of the 27th AIPR Workshop: Advances in Computer Assisted Recognition, 1998 Oct 16; Washington, DC. SPIE Proceedings 1999 Volume 3584:244-252.
8. Three-dimensional reconstruction for genomic analysis of prostate cancer
Wetzel A, Gilbertson J, Zheng L, Gilespie J, Swalwell J, Yagi Y, Kim S, Emmert-Buck M, Becich MJ. Three-dimensional reconstruction for genomic analysis of prostate cancer In: Oliver WR, editor. Proceedings of the 28th AIPR Workshop: 3D visualization for data exploration and decision making. Washington DC, SPIE Proceedings 2000 Volume 3905:204-212.
9. Prototype web-based continuing medical education using FlashPix images
Landman A, Yagi Y, Gilbertson JR, Dawson R, Marchevsky A, Becich MJ. Prototype web-based continuing medical education using FlashPix images. Proc AMIA Symposium 2000:462-6.
10. Zhao Y, Yagi Y, Nakajima I, Juzoji H. A Study of Wireless IP for Telemedicine. Proc. The Fourth International Symposium on Wireless Personal Multimedia Communications-Conference. 2001 Volume 3:1597-1600.
11. Cost Comparison between HEO Satellites and 3G Wireless Mobile Phones for Video Transmission from Ambulances
Nakajima, I, Yagi, Y, Zhao Y, Hamamoto N. Cost Comparison between HEO Satellites and 3G Wireless Mobile Phones for Video Transmission from Ambulances, Proc. The Fourth International Symposium on Wireless Personal Multimedia Communications-Conference. 2001 Volume 3:1573- 1578.
12. Inclined Elliptical Orbiter for Motion Picture Transmission from Ambulance ＜Calculate Suitable Channels for the Nation Wide Pre-hospital Care＞
Nakajima, I, Yagi, Y.Highly Inclined Elliptical Orbiter for Motion Picture Transmission from Ambulance ＜Calculate Suitable Channels for the Nation Wide Pre-hospital Care＞, Proc. The Fourth International Symposium on Wireless Personal Multimedia Communications-Conference. 2001 Volume 3:1585-1590.
13. Telepathology
Yagi, Y: Telepathology [chapters] in Telepathology 2002. Ishiyaku Publishers, Inc 2002: 31-35, 67-70.
14. Design and Prototype of Satellite Track with Quadrant Detector for Ambulances
Juzoji H, Yagi Y, Nakajima I, Hamamoto N, Nakajima A. Design and Prototype of Satellite Track with Quadrant Detector for Ambulances. The 20th International Communications Satellite Systems. Proc American Institute of Aeronautics and Astronautics 2002 2002-2005 CD-ROM.
15. Development of UDP/IP-based VSAT System for ETS-VIII ＜Aiming low-cost telemedical networks over developing nations＞
Yagi Y, Nakajima I, Juzoji H, Hamaoto N, Mano H.Development of UDP/IP-based VSAT System for ETS-VIII ＜Aiming low-cost telemedical networks over developing nations＞, The 20th International Communications Satellite Systems Proc American Institute of Aeronautics and Astronautics 2002-2005 CD-ROM.
16. Digital Imaging in Pathology: for Standardization
Yagi Y, Gilbertson J. Digital Imaging in Pathology: for Standardization. Proceedings of the 2003 International Telecommunications Union Workshop on Standards in E-Health. Published on line: http://www.itu.int/itudoc/itu-t/workshop/e-health/wcon/s7con001_ww9.doc.
17. Whole slide imaging applications in telepathology
Yagi Y, Gilbertson JR. Whole slide imaging applications in telepathology. Proceedings of the 3rd Asia Pacific Telemedicine Workshop 2005, Kuala Lumpur, Malaysia, January 2005, pages 205-209.
18. Bautista P, Abe T, Yamaguchi M, Yagi Y, Ohyama N. Digital Staining of Pathological Tissue Specimens using Spectral Transmittance. Proceedings of SPIE, Medical Imaging, Image Processing 2005:1892-1903.
19. Digital Imaging in Pathology
Yagi Y, Gilbertson JR. Digital Imaging in Pathology [chapter]. In: Japanese National Institute of Information and Communications Technology, editors. The International Telecommunication Union: making better access to healthcare services. Kyodo Bunkasha Ltd, Sapporo Japan. 2005.
20. Speed, resolution, focus and depth of field in whole slide imaging applications in clinical practice
Yagi Y, Gilbertson JR. Speed, resolution, focus and depth of field in whole slide imaging
applications in clinical practice [chapter]. In Gu, J, Ogilvie, RW, Editors. Virtual microscopy and virtual slides in teaching, diagnosis and research, Taylor & Francis, Boca Raton, 2005.
21. Clinical slide digitization - whole slide imaging in clinical Practice
Gilbertson JR, Patel AA, Yagi Y. Clinical slide digitization - whole slide imaging in clinical Practice [chapter]. In Gu, J, Ogilvie, RW, editors. Virtual microscopy and virtual slides in teaching, diagnosis and research, Taylor & Francis, Boca Raton, 2005.
22. Automated Whole Slide Imaging in Quality Assurance
Yagi Y, Ho J, Jukic DM, Anthony L, Parwani AV, Gilbertson JR. Automated Whole Slide Imaging in Quality Assurance. Proceedings of the 4th Asia Pacific Telemedicine Workshop 2006, Rawalpindi-Islamabad, Pakistan, January 2006.
23. Telepathology in US
Yagi Y, Telepathology in US, Telemedicine in Text Book for Hospital Management, Minister of Economy, Trade and Industry of Japan, 2006, (Japanese).
24. Digital Staining of Pathological Images: Dye Amount Correction for Improved Classification Performance
Bautista P, Abe T, Yamaguchi M, Yagi Y, Ohyama N. Digital Staining of Pathological Images: Dye Amount Correction for Improved Classification Performance. Proceedings of SPIE, Medical Imaging, Image Processing 2007:6514-112.
25. Multispectral Image Enhancement for H&E stained Pathological Tissue
Bautista P, Abe T, Yamaguchi M, Ohyama N, Yagi Y. Multispectral Image Enhancement for H&E stained Pathological Tissue. Proceedings of SPIE, Medical Imaging, Image Processing 2008: 6918- 114.
26. Color Correction of Pathological Images for Different Staining Conditions Slides by Using an RGB Camera
Abe T, Haneishi H, Bautista P, Murakami Y, Yamaguchi M, Ohyama N, Yagi Y. Color Correction of Pathological Images for Different Staining Conditions Slides by Using an RGB Camera.
Proceedings of Japanese Society of Medical Imaging Technology Frontier 2008.
27. Yagi Y, Virtual Slide, [chapter]. In Optoelectronic Industry and Technology Development Association, editors. Optics and Medicine, Foods, Agriculture, Optoelectronic Industry and Technology Development Association 2008; 86-91.
28. The Importance of Optical Optimization in Whole Slide Imaging (WSI) and Digital Pathology Imaging
Yagi Y, Gilbertson, JR. The Importance of Optical Optimization in Whole Slide Imaging (WSI) and Digital Pathology Imaging. Diagnostic Pathology 2008, 3(Suppl 1):S1, 2008.
29. A Relationship Between Slide Quality and Image Quality in Whole Slide Imaging (WSI).
Yagi Y, Gilbertson, JR. A Relationship Between Slide Quality and Image Quality in Whole Slide Imaging (WSI). Diagnostic Pathology 2008, 3(Suppl 1):S12, 2008.
30. Histology, Imaging and New Diagnostic Work-flows in Pathology
Gilbertson J, Yagi Y. Histology, Imaging and New Diagnostic Work-flows in Pathology. Diagnostic Pathology 2008, 3(Suppl 1):S14, 2008.
31. Detection of tissue folds in whole slide images
Bautista, P.A; Yagi, Y.; “Detection of tissue folds in whole slide images” EMBC2009, pp. 3669- 3672,Sep. 3-6, 2009.
32. Detection and Segmentation of Tissue Folds with Smoothing Filter and Color Subtraction
Bautista. P.A.; Yagi, Y.; “Detection and Segmentation of Tissue Folds with Smoothing Filter and Color Subtraction” submitted to EMC 2010.
33. Color standardization and optimization in whole slide imaging
Yagi Y. Color standardization and optimization in whole slide imaging. Diagn Pathol. 2011 Mar 30; 6 Suppl 1:S15.
34. Localization of eosinophilic esophagitis from H&E stained images using multispectral imaging
Bautista PA, Yagi Y. Localization of eosinophilic esophagitis from H&E stained images using multispectral imaging. Diagn Pathol. 2011 Mar 30; 6 Suppl 1:S2.
35. Digital Staining of Tissue Images by the combined application of Spectral Enhancement and Linear spectral Transformation
Bautista. P.A.; Yagi, Y., Digital Staining of Tissue Images by the combined application of Spectral Enhancement and Linear spectral Transformation, Proc. EMBC 2011.
36. Balancing image quality and compression factor for special stains whole slide images
Sharma A, Bautista P, Yagi Y. Balancing image quality and compression factor for special stains whole slide images. Anal Cell Pathol (Amst). 2012;35(2):101-6. doi: 10.3233/ACP-2011-0035.
37. Mitotic figure recognition: agreement among pathologists and Computerized detector
Malon C, Brachtel E, Cosatto E, Graf HP, Kurata A, Kuroda M, Meyer JS, Saito A, Wu S, Yagi Y. Mitotic figure recognition: agreement among pathologists and Computerized detector. Anal Cell Pathol (Amst). 2012;35(2):97-100. doi: 10.3233/ACP-2011-0029.
38. An Ultra-High Speed Whole Slide Image Viewing System
Yagi Y, Yoshioka S, Kyusojin H, Onozato M, Mizutani Y, Osato K, Yada H, Mark EJ, Frosch MP, Louis DN, An Ultra-High Speed Whole Slide Image Viewing System. Anal Cell Pathol (Amst).2012;35(1):65-73.doi:10.3233/ACP-2011-0042 PMID:22063731.
39. A Role of Three-Dimensional (3D) Reconstruction in the Classification of Lung Adenocarcinoma
Onozato M, Klepeis V, Yagi Y, Mino-Kenudson M. A Role of Three-Dimensional (3D) Reconstruction in the Classification of Lung Adenocarcinoma. Anal Cell Pathol (Amst). 2012;35(2):79-84, doi:10.3233/ACP-2011-0030. PMID:21955723.
40. The First Congress of the International Academy of Digital Pathology: digital pathology comes of age
Yagi Y, Rojo MG, Kayser K, Kayser G, Laurinavicius A, Della Mea V, Levy B, Klossa J, Tearney G, Szymas J, Tsuchihashi Y, Têtu B. The First Congress of the International Academy of Digital Pathology: digital pathology comes of age. Anal Cell Pathol (Amst). 2012;35(1):1-2.
41. An Ultra-High-Speed Whole Slide Image Viewing System
Yagi Y, Yoshioka S, Kyusojin H, Onozato M, Mizutani Y, Osato K, Yada H, Mark EJ, Frosch MP, Louis DN, An Ultra-High-Speed Whole Slide Image Viewing System. Anal Cell Pathol (Amst).2012;35(1): 65-73.doi:10.3233/ACP-2011-0042 PMID:22063731
42. A Role of Three-Demensional (3D) Reconstruction in the Classification of Lung Adenocarcinoma
Onozato M, Klepeis V, Yagi Y, Mino-Kenudson M. A Role of Three-Demensional (3D) Reconstruction in the Classification of Lung Adenocarcinoma. Anal Cell Pathol (Amst). 2012;35(2):79-84, doi:10.3233/ACP-2011-0030. PMID:21955723
43. Development of Standard Operating Procedure (SOP) of Micro-computed tomography (micro-CT) in Pathology
Alexei Teplov, Kazuhiro Tabata, Xiujun Fu, Naohiro Uraoka, Michael H. A. Roehrl, Peter Ntiamoah, John L. Humm, Sahussapont J. Sirintrapun, Melissa P. Murray, Jinru Shia, William D. Travis, Edi Brogi, Meera Hameed, Yukako Yagi. Development of Standard Operating Procedure (SOP) of Micro-computed tomography (micro-CT) in Pathology.
Yukako Yagi et al.; diagnostic pathology 2019, 5:273. ISSN 2364-4893
DOI: http://dx.doi.org/10.17629/www.diagnosticpathology.eu-2019-5:273
Professional educational materials or reports, in print or other media
1. The Status and Idea of Telepathology in US. Pathology and Clinical
Yagi Y. The Status and Idea of Telepathology in US. Pathology and Clinical.1997; 15(12): 1136-1143 (Japanese).
2. Telepathology Status in US. J of Clinical and Experimental Medicine
Yagi Y. Telepathology Status in US. J of Clinical and Experimental Medicine.2000;194(11): 875-879 (Japanese).
3. The Status and Future of Telepathology
Mukai K, Yagi Y. The Status and Future of Telepathology. New Horizon for Medicine 2001;33(1):66-71(Japanese).
4. Telepathology in US
Yagi Y, Telepathology in US, Telemedicine in Text Book for Hospital Management, Minister of Economy, Trade and Industry of Japan, 2006, (Japanese).
5. Evaluation of a Completely Automated Tissue-Sectioning Machine for Paraffin Blocks
Onozato M, Hammond S, Merren M, Yagi Y. Evaluation of a Completely Automated Tissue-Sectioning Machine for Paraffin Blocks. Perspectives on Digital Pathology 2012; 233-238.
6. An Ultra-High Speed Whole Slide Image Viewing System
Yagi Y, Yoshioka S, Kyusojin H, Onozato M, Mizutani Y, Osato K, Yada H. An Ultra-High Speed Whole Slide Image Viewing System. Perspectives on Digital Pathology 2012;239-249.
7. A Role of Three-Dimensional (3D) Reconstruction in the Classification of Lung Adenocarcinoma
Onozato, M, Klepeis V, Yagi Y, Mino-Kenudson, M. A Role of Three-Dimensional (3D) Reconstruction in the Classification of Lung Adenocarcinoma. Perspectives on Digital Pathology 2012;250-256.